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| Gangnery, Aline; Normand, Julien; Duval, Cyrielle; Cugier, Philippe; Grangeré, Karine; Petton, Bruno; Petton, Sebastien; Orvain, Francis; Pernet, Fabrice. |
| Oyster diseases have major consequences on fisheries and aquaculture. In France, young Pacific oysters Crassostrea gigas are severely hit by the ostreid herpesvirus, whereas adults suffer mortalities presumably caused by pathogenic bacteria. Here we investigated the origin and spread of mortalities that affect both young and adult oysters, and we identified and compared their risk factors. Mortality was monitored in 2 age classes of oysters deployed in early spring at 39 sites spread over a 37 km2 surface area inside and outside of shellfish farms. Environmental data obtained from numerical modelling were used to investigate risk factors. Mortality of young oysters associated with ostreid herpesvirus occurred in the oyster farming area. Hydrodynamic... |
| Tipo: Text |
Palavras-chave: Aquaculture; Bivalve; Disease; Epidemiology and health; Ecological modelling; Hydrodynamic connectivity. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00588/69983/67896.pdf |
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| Pasquer, B; Laruelle, G; Becquevort, S; Schoemann, V; Goosse, H; Lancelot, C. |
| We present results obtained with SWAMCO-4, a complex model of the marine planktonic system calculating C, N, P, Si, Fe cycling within the upper ocean, the export production and the exchange of CO2 between the ocean and atmosphere. The model, constrained by physical, chemical and biological (grazing, lysis) controls, explicitly details the dynamics of four relevant phytoplankton functional groups with respect to C, N, P, Si, Fe cycling and climate change. Those are diatoms, pico/nano phytoplankton, coccolithophorids, and Phaeocystis spp. whose growth regulation by light, temperature and nutrients has been obtained based on a comprehensive analysis of literature reviews on these taxonomic groups. The performance of SWAMCO-4 is first evaluated in a 1D... |
| Tipo: Text |
Palavras-chave: Ecological modelling; Diatoms; Pico/nanophytoplankton; Coccolithophorids; Phaeocystis spp.; Iron; Air-sea CO2 fluxes; Global ocean; Antarctic ocean; North Atlantic. |
| Ano: 2005 |
URL: https://archimer.ifremer.fr/doc/00232/34302/32677.pdf |
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| Fu, Caihong; Xu, Yi; Bundy, Alida; Grüss, Arnaud; Coll, Marta; Heymans, Johanna J.; Fulton, Elizabeth A.; Shannon, Lynne; Halouani, Ghassen; Velez, Laure; Akoğlu, Ekin; Lynam, Christopher P.; Shin, Yunne-jai. |
| Moving toward ecosystem-based fisheries management (EBFM) necessitates a suite of ecological indicators that are responsive to fishing pressure, capable of tracking changes in the state of marine ecosystems, and related to management objectives. In this study, we employed the gradient forest method to assess the performance of 14 key ecological indicators in terms of specificity, sensitivity and the detection of thresholds for EBFM across ten marine ecosystems using four modelling frameworks (Ecopath with Ecosim, OSMOSE, Atlantis, and a multi-species size-spectrum model). Across seven of the ten ecosystems, high specificity to fishing pressure was found for most of the 14 indicators. The indicators biomass to fisheries catch ratio (B/C), mean lifespan and... |
| Tipo: Text |
Palavras-chave: Ecological modelling; Fishing pressure; Gradient forest method; Indictor performance; Marine ecosystem; Primary productivity. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00500/61148/64576.pdf |
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| Plus, Martin; Chapelle, Annie; Lazure, Pascal; Auby, Isabelle; Levavasseur, G; Verlaque, M; Belsher, Thomas; Deslous-paoli, Jean-marc; Zaldivar, J; Murray, C. |
| A three-dimensional model coupling physical and biological processes for the whole Than lagoon (Mediterranean coast of France) was developed in order to assess the relationships between macrophytes and the oxygen and nitrogen cycles. Ten species have been inserted as forcing variables in the model. Plankton dynamics, shellfish cultivation impact and mineralization of organic matter are also considered, as well as nutrient and oxygen exchanges between the sediment and the water column. Simulations with and without the macrophytes have shown that the system can be characterized as having a highly structured pattern involving lagoon nitrogen and oxygen cycles. This pattern is created by the combined influence of macrophytes, watershed and oyster farming.... |
| Tipo: Text |
Palavras-chave: Thau lagoon; Biogeochemical cycles; Ecological modelling; Macrophytes. |
| Ano: 2003 |
URL: https://archimer.ifremer.fr/doc/2003/publication-459.pdf |
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| Silva,Raimunda Alves; Siqueira,Glécio Machado. |
| ABSTRACT The objective of this study was to determine the multifractality of diversity indexes of edaphic fauna in areas with natural vegetation and in agricultural systems. Biological sampling was carried out in seven treatments (millet, maize, soybean, eucalyptus, preserved cerrado, disturbed cerrado and pasture), containing 130 pitfall traps, distributed in transects with 3 m of spacing between sampling points, totaling 390 m. The multifractal analysis was determined based on the moment method, where estimates such as the capacity dimensions, entropy and the correlation of the diversity indexes were calculated. The soybean area had greater Shannon diversity (2.69), however it had smaller abundance of individuals. The partition functions were adjusted... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Ecological modelling; Arthropods communities; Multifractality; Generalized dimension; Singularity spectrum. |
| Ano: 2020 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052020000100120 |
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